RnoEX0022837 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31458322-31466450:-
Coord C1 exon
chr20:31466415-31466450
Coord A exon
chr20:31461696-31461782
Coord C2 exon
chr20:31458322-31458360
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACTAAACCATTGCTCACAGGGG
3' ss Score
3.64
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GGTTTACACGGACCACCCGGGGACAAAGGAAACCGG
Seq A exon
GGGGAGAGGGGGAAGAAGGGCTCTAGAGGGCCTAAAGGGGACAAGGGGGACCAAGGAGCACCTGGACTAGACGCCCCCTGCCCACTG
Seq C2 exon
GGAGAAGATGGCTTACCAGTCCAAGGCTGCTGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'42-47,'42-45,43-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(15.7=100)
A:
PF0139113=Collagen=FE(40.0=100)
C2:
PF0139113=Collagen=PD(10.0=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTACACGGACCACCC
R:
CTTGTTCCAGCAGCCTTGGAC
Band lengths:
75-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]