GgaEX0005711 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10628110-10635363:+
Coord C1 exon
chr6:10628110-10628145
Coord A exon
chr6:10631307-10631393
Coord C2 exon
chr6:10635325-10635363
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACTAAACTGTTATTTACAGGGG
3' ss Score
5.54
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGTTTACAAGGTCTGCCTGGTGACAAAGGAATCCGG
Seq A exon
GGGGAGAGGGGCAAGAAAGGCTCTAGAGGGTCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGATGCACCCTGTCCGTTG
Seq C2 exon
GGAGAAGACGGCCTTCCGGTTCAAGGCTGCTGGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.0=83.3),PF0139113=Collagen=FE(16.4=100)
A:
PF0139113=Collagen=FE(41.2=100)
C2:
PF0139113=Collagen=PD(10.3=53.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTACAAGGTCTGCCTGG
R:
TATTCCAGCAGCCTTGAACCG
Band lengths:
73-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]