GgaEX0005711 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12141039-12148292:+
Coord C1 exon
chr6:12141039-12141074
Coord A exon
chr6:12144236-12144322
Coord C2 exon
chr6:12148254-12148292
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACTAAACTGTTATTTACAGGGG
3' ss Score
5.54
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGTTTACAAGGTCTGCCTGGTGACAAAGGAATCCGG
Seq A exon
GGGGAGAGGGGCAAGAAAGGCTCTAGAGGGTCTAAAGGGGATAAGGGAGACCAAGGAGCGCCTGGATTAGATGCACCCTGTCCGTTG
Seq C2 exon
GGAGAAGACGGCCTTCCGGTTCAAGGCTGCTGGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'39-42,'39-40,40-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.0=83.3),PF0139113=Collagen=FE(15.7=100)
A:
PF0139113=Collagen=PD(10.0=53.8)
C2:
PF0139113=Collagen=PD(10.0=53.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTACAAGGTCTGCCTGG
R:
TATTCCAGCAGCCTTGAACCG
Band lengths:
73-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]