MmuEX0018454 @ mm10
Exon Skipping
Gene
ENSMUSG00000054942 | Miga1
Description
mitoguardin 1 [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:152290791-152317737:-
Coord C1 exon
chr3:152317614-152317737
Coord A exon
chr3:152297117-152297217
Coord C2 exon
chr3:152290791-152290909
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTGTTACGTTTAAGATA
3' ss Score
6.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATATTATTAGTTCAGAATTCATCCATAAACTTGAAGCTCTACTGCAAAGAGCGTATCGTCTCCAAGAGGAGTTTGAGGCTACCCTTGGGGGATCTGACCCTAATTCCATTGCAAATGATACTG
Seq A exon
ATAAAGACACAGACATGAGCTTGAGGGAGACTATGGATGAGCTTGGCCTGCCAGACGCCATGAACATGGACTCAGCAGATCTCTTTGCTTCAGCAACAGAG
Seq C2 exon
CTCGCAGAGCAGAGAGAAGCGCAGCAGACCTTCAGCCTGGAGTCTTTTTGTCCCTGCCCTTTCTACGAAGAAGCTATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942_MULTIEX2-5/8=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.435 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PU(28.4=97.1)
A:
PF102654=DUF2217=FE(11.7=100),PF102654=DUF2217=PU(1.0=5.9)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAATTCATCCATAAACTTGA
R:
CTCAGCACTCTGGAGTAAATTTTTCC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types