RnoEX0054536 @ rn6
Exon Skipping
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257507357-257537627:-
Coord C1 exon
chr2:257537504-257537627
Coord A exon
chr2:257514421-257514521
Coord C2 exon
chr2:257507357-257507487
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCACCCTTGTTACTTTAAGACA
3' ss Score
4.46
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GACATCATTAGCACGGAGTTCATCCACAAACTGGAAGCTCTGCTGCAGAGAGCATACCGGCTCCAAGAGGAGTTTGAAGCTGCCCTCGGGGGGTCCGACCCGGATTCCCTTGCGAATGACACTG
Seq A exon
ACAAAGACACAGATCTGAGCGTGAGGGAGACTGTGGACGAGTTTGGCCTGCCAGACACAGCGAACATTGACTCGGCAGATCTCTTTGCTTCAGCAACAGAG
Seq C2 exon
CTTGCAGAGCACAGAGAAGCACAGCAAGCCCTCAGCCTGGAGTCTTTTTGTCGCTGCCCTTTTTACGAAGAAGCTATGCATCTGGTGGAAGAAGGGAAAATTCACTCCAGAGTACTGAGGTATCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332-'12-13,'12-10,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(14.6=100)
A:
PF102654=DUF2217=FE(11.7=100),PF102654=DUF2217=PU(1.0=5.9)
C2:
PF102654=DUF2217=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCATTAGCACGGAGTTCATCC
R:
GCGATACCTCAGTACTCTGGAGT
Band lengths:
249-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]