DreEX0031954 @ danRer10
Exon Skipping
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8880482-8883039:-
Coord C1 exon
chr2:8882904-8883039
Coord A exon
chr2:8881005-8881225
Coord C2 exon
chr2:8880482-8880618
Length
221 bp
Sequences
Splice sites
3' ss Seq
ACAGCCATGTCACCCTGCAGCCC
3' ss Score
5.96
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGAGGAGCAGGCACTCCTCTAGCAGCTCTACGTGTGCTAATGGTTCCAATTGTTGGGAAGAAGCAGGAGACGCCGCTGACGTCTGTAACCTGCTCAGCCTCCCTGTCGCCACCCCAGAGAATCTCTACCTGATGG
Seq A exon
CCCAAGACCGCTTACTCACTGAAGCTAAGCAGGGCTGAGCCTGGTCAGTACCTGGATGGGAGACCACTAGGGAACACTAGGTTGCTGTTGGAAGTGGTGTTAGTGAGGCCAGCAGGGGGCGCTCAACCTGTGGTCTGTGTGAGTCCTAATGCCCCAGTAAAAGGGAAGGGGACACTAAACTGTCAGTGAGTGGTGTCTTTCGGATGAGACGTTAAAGCGAG
Seq C2 exon
GAATGGAGTTGTTCGAGGAAGCCTTGCGGCGATGGGAGCAGGCATTAACGTTCCGCAGCAGACAAGCAGAAGACGAGGGTAGCTGCGTATCCGTGAAGCTCGGAGCTGGAGACGCCATTGCAGAGGAAAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(28.7=100)
A:
PF102654=DUF2217=PD(6.4=76.9)
C2:
PF102654=DUF2217=FE(8.3=100)
Main Inclusion Isoform:
ENSDART00000010257fB2687
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGCACTCCTCTAGCAG
R:
CTCCATGCTTTCCTCTGCAATG
Band lengths:
268-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]