GgaEX0013112 @ galGal3
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19651299-19675291:-
Coord C1 exon
chr8:19675168-19675291
Coord A exon
chr8:19656932-19657032
Coord C2 exon
chr8:19651299-19651417
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAATTTGTTTTAAAGATA
3' ss Score
7.65
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATATCATTAGTGCTGAATTCATCCATAAGCTTGAATCCCTGCTTCAAAGAGCTTATCGTCTTCAGGAAGAGTTTGAGGCCACCCTTGGGACCTCTGATCCTGCTTCTCTGGCTAATGATATTG
Seq A exon
ATAAAAATACAGACATTACTGTAAAGGATAACACGGATGATTTTTGCCTTCGAGATACATTAAGCATTGCATCGACGGACTCTTTTGTTTCCACAGCTGAG
Seq C2 exon
CTTACAGAGCATAGAGAAGCTCGTAATACCTACGGTCTAGATTCCCTTTGCCATTGTCCACTGTATGAAGAAGCAATGCACTTAGCAGAAGAAGGCAAAATTTATTCACGAGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951-'5-7,'5-5,6-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.5=100)
A:
PF102654=DUF2217=FE(6.0=100)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCATTAGTGCTGAATTCATCCA
R:
TTAAGACTCGTGAATAAATTTTGCCT
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]