GgaEX0013112 @ galGal4
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr8:17850438-17874430:-
Coord C1 exon
chr8:17874307-17874430
Coord A exon
chr8:17856071-17856171
Coord C2 exon
chr8:17850438-17850556
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAATTTGTTTTAAAGATA
3' ss Score
7.65
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATATCATTAGTGCTGAATTCATCCATAAGCTTGAATCCCTGCTTCAAAGAGCTTATCGTCTTCAGGAAGAGTTTGAGGCCACCCTTGGGACCTCTGATCCTGCTTCTCTGGCTAATGATATTG
Seq A exon
ATAAAAATACAGACATTACTGTAAAGGATAACACGGATGATTTTTGCCTTCGAGATACATTAAGCATTGCATCGACGGACTCTTTTGTTTCCACAGCTGAG
Seq C2 exon
CTTACAGAGCATAGAGAAGCTCGTAATACCTACGGTCTAGATTCCCTTTGCCATTGTCCACTGTATGAAGAAGCAATGCACTTAGCAGAAGAAGGCAAAATTTATTCACGAGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCATTAGTGCTGAATTCATCCA
R:
TTAAGACTCGTGAATAAATTTTGCCT
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]