MmuEX0018454 @ mm9
Exon Skipping
Gene
ENSMUSG00000054942 | Fam73a
Description
family with sequence similarity 73, member A [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:151953755-151980701:-
Coord C1 exon
chr3:151980578-151980701
Coord A exon
chr3:151960081-151960181
Coord C2 exon
chr3:151953755-151953873
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTGTTACGTTTAAGATA
3' ss Score
6.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GATATTATTAGTTCAGAATTCATCCATAAACTTGAAGCTCTACTGCAAAGAGCGTATCGTCTCCAAGAGGAGTTTGAGGCTACCCTTGGGGGATCTGACCCTAATTCCATTGCAAATGATACTG
Seq A exon
ATAAAGACACAGACATGAGCTTGAGGGAGACTATGGATGAGCTTGGCCTGCCAGACGCCATGAACATGGACTCAGCAGATCTCTTTGCTTCAGCAACAGAG
Seq C2 exon
CTCGCAGAGCAGAGAGAAGCGCAGCAGACCTTCAGCCTGGAGTCTTTTTGTCCCTGCCCTTTCTACGAAGAAGCTATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942_MULTIEX1-1/8=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.441 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(14.6=100),PF048887=SseC=PU(11.2=26.2)
A:
PF102654=DUF2217=FE(11.7=100),PF048887=SseC=FE(33.7=100),PF102654=DUF2217=PU(1.0=5.9)
C2:
PF102654=DUF2217=FE(7.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAATTCATCCATAAACTTGA
R:
CTCAGCACTCTGGAGTAAATTTTTCC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: