BtaEX6016960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031044 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr3:67076243-67110278:-
Coord C1 exon
chr3:67110155-67110278
Coord A exon
chr3:67088017-67088117
Coord C2 exon
chr3:67076243-67076361
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCCTTTTCTTTTCAGATA
3' ss Score
12.1
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GATATTATTAGTACTGAATTCATCCATAAACTTGAATCTCTGTTGCAAAGAGCATATCGTCTCCAAGAGGAGTTCGAAGCTACCTTGGGGGCATCTGATCCTAATTCCCTTGTTAATGATACTG
Seq A exon
ATAAAGATACAGATGTCACCATGAAAGGGAATGCGGATGACTTCAGCCTGAGAGACACCCTGAGTGTCGCATCAACCGATTCCTTTACTTCAACAGCAGAG
Seq C2 exon
CTTGCAGAGCACAAAGAAGCGCGGCATACCTACAGCCTGGAGTCCCTTTGCCACTGTCCTTTTTACGAAGAGGCCATGCGCTTAGTTGAAGAAGGAAAAATTTACTCAAGAGTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031044-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.235 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.5=100)
A:
PF102654=DUF2217=FE(6.0=100)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATAAACTTGAATCTCTGTTGCA
R:
AGCACTCTTGAGTAAATTTTTCCTT
Band lengths:
218-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]