HsaEX6031719 @ hg19
Exon Skipping
Gene
ENSG00000180488 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:24741]
Coordinates
chr1:78280793-78324781:+
Coord C1 exon
chr1:78280793-78280916
Coord A exon
chr1:78308992-78309092
Coord C2 exon
chr1:78324623-78324781
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTCACCTTTTACTTTTAAGATA
3' ss Score
8.96
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GATATTATTAGTACTGAATTTATCCATAAACTCGAAGCTCTGCTGCAAAGAGCCTATCGTCTCCAAGAGGAGTTTGAAGCTACCCTTGGGGCATCTGATCCTAATTCCCTTGCTGATGATATTG
Seq A exon
ATAAAGATACAGATATCACCATGAAGGGTAATGTGGAAGACTTTGGCCTGCGAGACACCTTGAGCATCGCATCCACGGATTCCTTTGCTTCCGCAGCAGAG
Seq C2 exon
CTTGCAGAACACAGAGAAGTACGGCATACCTACAGCCTGGAGTCCCTTTGTCACTGCCCATTTTACGAGGAAGCCATGCATTTAGTTGAAGAAGGAAAAATTTACTCCAGAGTACTGAGGTACCATTTCAGTTTTGTTTATGTTTATGAAGGATATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-'10-13,'10-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.5=100)
A:
PF102654=DUF2217=FE(6.0=100)
C2:
PF102654=DUF2217=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATAAACTCGAAGCTCTGCTG
R:
AAACAAAACTGAAATGGTACCTCAGT
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)