MmuEX0024732 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108313604-108319159:+
Coord C1 exon
chr6:108313604-108313699
Coord A exon
chr6:108315293-108315337
Coord C2 exon
chr6:108319005-108319159
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAGTCCAGCACGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCTGCAGAG
Seq A exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq C2 exon
GTGGACCCTGATCAGGATGCATCTCGGAGTAGGTTGAGAAACGCGCAAGAAAAAATGGTATACTCTCTGGTCTCCGTGCCTGAAGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACGACTCTGCGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.185
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
PF0281514=MIR=FE(6.9=100)
C2:
PF0281514=MIR=FE(25.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCGGTTCAAGCACCTG
R:
GGAGATGTCGTTGCCTTCAGG
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types