RnoEX0045413 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140396682-140402117:+
Coord C1 exon
chr4:140396682-140396777
Coord A exon
chr4:140398420-140398464
Coord C2 exon
chr4:140401963-140402117
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAGTCCAGCATGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCAGCAGAG
Seq A exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq C2 exon
GTGGACCCTGATCAGGACGCATCTCGGAGCAGGTTGAGAAATGCCCAAGAAAAAATGGTGTACTCTCTGGTCTCTGTGCCTGAGGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACAACTCTACGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.187
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
PF0281514=MIR=FE(6.9=100)
C2:
PF0281514=MIR=FE(25.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCGGTTCAAGCACCTG
R:
CTCAGGCACAGAGACCAGAGA
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]