GgaEX0011999 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18431581-18435581:+
Coord C1 exon
chr12:18431581-18431676
Coord A exon
chr12:18433038-18433082
Coord C2 exon
chr12:18435427-18435581
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTGTGATTCTGTTTCATCAGGTA
3' ss Score
8.07
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGTACAGCATGATCCTTGTCGTGGCGGTGCAGGGTACTGGAACAGTCTGTTCAGGTTCAAACACCTTGCTACTGGACACTACTTAGCGGCAGAG
Seq A exon
GTAAACCCTGACTATGAGGAAGATGACCAGGAGTGTCAATCCTCA
Seq C2 exon
CAGGACCCTGAGCAGGATGCCTCCAGAAGAGGCCTGCGCAGCGCTCAGGAGAAGATGGCGTACTCTCTGGTGTCTGTGCCTGAAGGAAATGATATCTCCTCCATATTCGAGTTGGACCCCACCACCCTGCGAGGAGGAGACAGCCTTGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.800 C2=0.288
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
PF0281514=MIR=FE(6.9=100)
C2:
PF0281514=MIR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACTACTTAGCGGCAGA
R:
TGGTGGGGTCCAACTCGAATA
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]