MmuEX0024732 @ mm10
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108363610-108369165:+
Coord C1 exon
chr6:108363610-108363705
Coord A exon
chr6:108365303-108365343
Coord C2 exon
chr6:108369011-108369165
Length
41 bp
Sequences
Splice sites
3' ss Seq
GATTCTTTTTCATCAGGTAGACC
3' ss Score
-0.35
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTAGTCCAGCACGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCTGCAGAG
Seq A exon
ACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq C2 exon
GTGGACCCTGATCAGGATGCATCTCGGAGTAGGTTGAGAAACGCGCAAGAAAAAATGGTATACTCTCTGGTCTCCGTGCCTGAAGGCAACGACATCTCCTCCATCTTTGAGCTAGACCCCACGACTCTGCGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'38-30,'38-29,39-30
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.099 C2=0.183
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
PF0281514=MIR=FE(12.7=100)
C2:
PF0281514=MIR=FE(25.2=100)
Main Inclusion Isoform:
ENSMUST00000203936fB2083
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCGGTTCAAGCACCTG
R:
GGAGATGTCGTTGCCTTCAGG
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types