HsaEX0032557 @ hg19
Exon Skipping
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4693807-4699962:+
Coord C1 exon
chr3:4693807-4693902
Coord A exon
chr3:4695526-4695570
Coord C2 exon
chr3:4699808-4699962
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGTCCAGCATGACCCATGTCGGGGCGGAGCAGGGTATTGGAACAGCCTTTTCCGTTTCAAGCATCTGGCCACGGGGCATTACTTGGCAGCAGAG
Seq A exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq C2 exon
GTGGACCCTGATCAGGACGCCTCTCGAAGTAGGTTGCGGAATGCCCAAGAAAAGATGGTATACTCCCTGGTCTCTGTGCCTGAAGGCAATGACATCTCCTCCATTTTCGAGCTAGATCCCACCACTCTGCGTGGAGGTGACAGCCTTGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.163
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.6=100)
A:
PF0281514=MIR=FE(13.1=100)
C2:
PF0281514=MIR=FE(27.3=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGGTATTGGAACAGCC
R:
GGCACAGAGACCAGGGAGTAT
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)