BtaEX0018593 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21809757-21816568:-
Coord C1 exon
chr22:21816473-21816568
Coord A exon
chr22:21814460-21814504
Coord C2 exon
chr22:21809757-21809911
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAATGATTCTTTTTCATCAGGTA
3' ss Score
7.24
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGGTCCAACATGACCCATGTCGGGGAGGAGCAGGGTACTGGAACAGCCTCTTCCGTTTCAAGCATCTTGCTACCGGGCATTACTTAGCAGCAGAG
Seq A exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
Seq C2 exon
GTGGACCCTGATCAGGATGCCTCCCGAAGCAGGTTGCGAAATGCCCAAGAGAAGATGGTGTACTCCCTGGTCTCTGTGCCCGAGGGCAATGACATCTCCTCCATTTTTGAGCTGGACCCCACGACGCTCCGTGGAGGCGACAGCCTCGTCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.133 C2=0.192
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.3=100)
A:
PF0281514=MIR=FE(6.9=100)
C2:
PF0281514=MIR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTTGCTACCGGGCATTA
R:
TGGAGGAGATGTCATTGCCCT
Band lengths:
137-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development