DreEX6092741 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35703520-35707350:-
Coord C1 exon
chr11:35707255-35707350
Coord A exon
chr11:35703644-35703688
Coord C2 exon
chr11:35703520-35703549
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTTTGCATTCACAGGTC
3' ss Score
10.42
5' ss Seq
TCTGTAAGC
5' ss Score
4.33
Exon sequences
Seq C1 exon
GTGGTCCAGCATGACCCATGTCGTGGCGGCGCCGGTTACTGGAACAGTCTGTTCAGATTTAAGCATTTGGCCACAGGACATTATCTGGCCGCAGAG
Seq A exon
GTCAATCCTGACTATGAGGAAGAATCGCAGGAATCCCGTTCATCT
Seq C2 exon
GTGGCAGATTTTTCACCCTTTAACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'9-11,'9-10,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.733 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(14.6=100)
A:
PF0281514=MIR=FE(6.6=100)
C2:
PF0281514=MIR=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCATGACCCATGTCG
R:
AGTTAAAGGGTGAAAAATCTGCCAC
Band lengths:
118-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]