MmuEX0025159 @ mm10
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25898699-25900480:+
Coord C1 exon
chr2:25898699-25898835
Coord A exon
chr2:25900223-25900286
Coord C2 exon
chr2:25900372-25900480
Length
64 bp
Sequences
Splice sites
3' ss Seq
CAGCAGCTGCTGCTCTGCAGGAT
3' ss Score
3.96
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GACTACTACGTGGTCATCCTGTGTCCCTCTGAAATGGACGTCCAGGTGCGCAGGGTGCTGCAGATTCCCCTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCTGCCCTCAAGGACCAGGATCTCATGCGAGCCAA
Seq A exon
GATGGACAACGGAGAGGCCTGCTTTATCCTCAGCAGCAGGAATGAGGTGGACCGCACAGCTGCG
Seq C2 exon
GATCACCAGACCATCCTTCGAGCCTGGGCTGTGAAGGACTTTGCCCCCAACTGTCCCCTCTATGTCCAGATCCTCAAGCCCGAAAACAAGTTTCACGTCAAATTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740_MULTIEX2-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(9.4=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATCTACCTCCAGGGCTC
R:
TTTCGGGCTTGAGGATCTGGA
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types