DreEX6014308 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64841160-64852255:+
Coord C1 exon
chr5:64841160-64841296
Coord A exon
chr5:64849941-64850004
Coord C2 exon
chr5:64852147-64852255
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGACGTTTTGTGTCATGCAGGAT
3' ss Score
9.12
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACTATTATGTGGTGATCCTCTGTCCCACGGAGATGGACATCCAGGTGCGGCGAATACTGCAGATCCCACTGTGGTCTCAGCGGGTCATCTACCTCCAAGGCTCTGCACTGAAGGACCAAGACCTCATGAGGGCCAA
Seq A exon
GATGGATGATGCGGAGGCCTGCTTCATCCTCAGCAGCAGAAATGAAGTGGACCGCACCGCTGCT
Seq C2 exon
GATCATCAGACCATTCTGCGAGCCTGGGCTGTGAAGGATTTTGCTCCAAACTGTCCTCTTTATGTCCAGATCCTCAAACCCGAGAACAAATTTCATGTCAAATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(9.4=27.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCAGCGGGTCATCTAC
R:
TCGGGTTTGAGGATCTGGACA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]