GgaEX0001933 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8917949-8918502:-
Coord C1 exon
chr17:8918366-8918502
Coord A exon
chr17:8918138-8918201
Coord C2 exon
chr17:8917949-8918057
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATGCTGCTCTCTGCTTGCAGGAT
3' ss Score
11.24
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GACTACTACGTGGTGATCCTCTGCCCCACGGAGATGGACATCCAGGTGCGGCGGGTACTGCAGATCCCTCTGTGGTCACAGCGGGTGATCTACCTGCAGGGCTCCGCGCTGAAGGACCAGGACCTCATGAGAGCCAA
Seq A exon
GATGGACAATGGGGAAGCCTGCTTCATTCTCAGCAGCCGGAATGAGGTGGACCGCACAGCGGCG
Seq C2 exon
GACCACCAGACCATCCTGAGAGCCTGGGCCGTGAAAGATTTTGCCCCAAACTGCCCTCTCTATGTGCAGATCCTGAAGCCAGAGAACAAGTTTCACGTCAAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(9.4=27.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTACCTGCAGGGCTCC
R:
TCTCTGGCTTCAGGATCTGCA
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]