BtaEX6047093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103419189-103420527:+
Coord C1 exon
chr11:103419189-103419325
Coord A exon
chr11:103420245-103420308
Coord C2 exon
chr11:103420419-103420527
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCAGACCTGGTGCTTTGCAGGAT
3' ss Score
6.87
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GACTACTACGTCGTCATCCTGTGCCCCACGGAGATGGACATCCAGGTTCGCAGGGTCCTGCAGATCCCACTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCCGCGCTCAAGGATCAGGACCTCATGCGGGCCAA
Seq A exon
GATGGACAATGGGGAGGCCTGCTTTATTCTCAGCAGCCGGAACGAGGTGGACCGCACCGCTGCG
Seq C2 exon
GACCACCAGACCATACTGCGTGCCTGGGCCGTGAAGGACTTTGCCCCAAACTGCCCCCTCTACGTCCAGATCCTCAAGCCTGAGAACAAGTTTCATGTCAAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'23-17,'23-16,24-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0349313=BK_channel_a=PU(9.4=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCTACCTCCAGGGCTCC
R:
TCAGGCTTGAGGATCTGGACG
Band lengths:
136-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]