MmuEX0025278 @ mm10
Exon Skipping
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:122883319-122921471:-
Coord C1 exon
chr5:122921385-122921471
Coord A exon
chr5:122888530-122888754
Coord C2 exon
chr5:122883319-122883462
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTGTTCTTGACCAGAAC
3' ss Score
7.51
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AATGTACTGAAAGAGCACGTGGATGACGACCCCACCCTGGCCATCACCGGGGTCCCTGTGGTCAGCTGGCCAAAGAAAACTGCAAAG
Seq A exon
AACCGGGTGGTGGGTCGGCCTAAGGGCAAGTTGGGCCCGGCCTCAGCGGTGAAGTTGGCTGCCAACCGAACAACAGCAGGAGCTCGCAGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACGGAGTGTGGAGAGTGCCACTTTTGCAAGGACATGAAGAAGTTTGGAGGTCCTGGGCGCATGAAGCAGAGCTGCATCATGCGGCAGTGCATCGCG
Seq C2 exon
CCAGTGCTGCCCCACACCGCCGTGTGCCTTGTGTGTGGCGAGGCAGGGAAGGAGGACACAGTGGAAGAGGAAGAAGGCAAGTTTAACCTCATGCTCATGGAATGCTCCATCTGCAACGAGATCATCCACCCTGGATGCCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475-'43-36,'43-33,53-36
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.187 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=62.7)
C2:
PF0013017=C1_1=FE(81.0=100),PF0062824=PHD=PU(61.5=83.3),PF0030115=Rubredoxin=PU(35.6=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTGAAAGAGCACGTGGA
R:
CTTAAGGCATCCAGGGTGG
Band lengths:
229-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types