RnoEX0046422 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39102948-39148427:+
Coord C1 exon
chr12:39102948-39103034
Coord A exon
chr12:39142272-39142496
Coord C2 exon
chr12:39148284-39148427
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTGTTCTTGACCAGAAC
3' ss Score
7.51
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AATGTACTGAAGGAACACGTGGATGATGACCCCAACCTGGCCATCACCGGGGTCCCCGTGGTCAGTTGGCCAAAGAAAACTCCAAAG
Seq A exon
AACCGGGTGGTGGGTCGGCCTAAGGGCAAGTTGGGCCCGGCCTCAGCGGTGAAGTTGGCTGCCAACCGAACAACAGCAGGAGCTCGCAGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACGGAGTGTGGAGAGTGCCACTTTTGCAAGGACATGAAGAAGTTCGGAGGTCCTGGGCGCATGAAGCAGAGCTGCATCATGCGGCAGTGCATCGCG
Seq C2 exon
CCAGTGCTGCCCCACACCGCCGTGTGCCTTGTGTGTGGCGAGGCAGGGAAGGAGGACACAGTGGAAGAGGAAGAAGGCAAGTTTAACCTCATGCTCATGGAGTGCTCCATCTGCAACGAGATCATCCACCCTGGATGCCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.213 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=62.7),PF0013017=C1_1=PU(1.9=1.3)
C2:
PF0062824=PHD=PU(61.5=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTGAAGGAACACGTGGA
R:
CTTAAGGCATCCAGGGTGG
Band lengths:
229-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]