GgaEX1031463 @ galGal3
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
NA
Coordinates
chr15:5535258-5558766:-
Coord C1 exon
chr15:5558680-5558766
Coord A exon
chr15:5538954-5539178
Coord C2 exon
chr15:5535258-5535401
Length
225 bp
Sequences
Splice sites
3' ss Seq
CGTGTATCTGGCTCTTTCAGAAC
3' ss Score
9.25
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AACATTCTGAAAGAACATGCTGATGATGACCAAAATCTTGCGATTTCGGGTGTCCCTGTGGTCAGCTGGCCCAAGAAGACCCCAAAG
Seq A exon
AACAGGGCGGTGGGACGGCCCAAAGGGAAGCTGGGCGCTGCCTCTGCGGTGAAGCTCGCAGCTAACCGGACCACGGCCGGAGCACGCCGGAGGAGGACGCGATGCCGCAAGTGCGAGGCGTGCCTGCGGACAGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTTGGGGGGCCTGGCAGGATGAAACAGTCCTGCATTATGAGGCAGTGTATCGCA
Seq C2 exon
CCGGTGTTGCCTCATACTGCTGTATGTCTGGTGTGTGGAGAAGCTGGGAAAGAGGACACTGTGGAAGAGGAGGAGAGCAAGTTTAATCTCATGCTAATGGAATGCTCCATTTGTAATGAAATAATACACCCAGGATGCCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225-'31-35,'31-34,35-35=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.160 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=62.7)
C2:
PF0062824=PHD=PU(61.5=83.3),PF0030115=Rubredoxin=PU(35.6=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCTGAAAGAACATGCTGATGA
R:
CTTAAGGCATCCTGGGTGTAT
Band lengths:
230-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]