GgaEX1031463 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5482652-5513769:-
Coord C1 exon
chr15:5513315-5513769
Coord A exon
chr15:5486348-5486572
Coord C2 exon
chr15:5482652-5482795
Length
225 bp
Sequences
Splice sites
3' ss Seq
CGTGTATCTGGCTCTTTCAGAAC
3' ss Score
9.25
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATGCAAAGAGAAAACGCAGCATAGACAGCTATTCATCGGATTCGTGGTTAGACATGGATGAAGAATCTTGTGATGCTCATATCCGGGAGGAAAAGGATGACAGCTTGGATAAGAACTCCAAATCCCTGGTGGATGGCTCCTCCTCACCCAACAGCACACATTCAGAAGGAAAGGAGGGTGCAGGGAGAAAACAAAAAGCCACAGTAATGAGGTACCTAAAAAGAACTTTGTCTAATGAGTCAGATGACAGTGTAAAATCAACGACCCCCACGGATTATCCCAAAACACCAACGGGGTCTCCAGCTACAGAAGTTTCAACCAAATGGACTCACCTCACAGAATTTGAACTGAAGGGTTTAAAAGCCCTGGTGGAAAAGCTTGAATCTCTCCCAGAGAACAAGAAGTGTGTTCCAGAAGGCATTGAGGATCCACAGGCTCTCCTGGAGGACATGAAG
Seq A exon
AACAGGGCGGTGGGACGGCCCAAAGGGAAGCTGGGCGCTGCCTCTGCGGTGAAGCTCGCAGCTAACCGGACCACGGCCGGAGCACGCCGGAGGAGGACGCGATGCCGCAAGTGCGAGGCGTGCCTGCGGACAGAGTGCGGCGAGTGTCACTTCTGCAAAGACATGAAGAAGTTTGGGGGGCCTGGCAGGATGAAACAGTCCTGCATTATGAGGCAGTGTATCGCA
Seq C2 exon
CCGGTGTTGCCTCATACTGCTGTATGTCTGGTGTGTGGAGAAGCTGGGAAAGAGGACACTGTGGAAGAGGAGGAGAGCAAGTTTAATCTCATGCTAATGGAATGCTCCATTTGTAATGAAATAATACACCCAGGATGCCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_MULTIEX1-6/13=4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.586 A=0.160 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=62.7)
C2:
PF0062824=PHD=PU(61.5=83.3),PF0030115=Rubredoxin=PU(35.6=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGGGTGCAGGGAGAAAA
R:
ACAGCAGTATGAGGCAACACC
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]