BtaEX6072557 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:55973104-56007277:+
Coord C1 exon
chr17:55973104-55973190
Coord A exon
chr17:56002208-56002432
Coord C2 exon
chr17:56007134-56007277
Length
225 bp
Sequences
Splice sites
3' ss Seq
GCCCGTGTCTTCTCCCGCAGAAC
3' ss Score
11.97
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AATGTCCTGAAGGAGCACGCGGAGGACGACCCCAGTCTGGCCATCACTGGGGTCCCCGTAGTCACTTGGCCAAAGAAGACTCCAAAG
Seq A exon
AACCGGGCGGTAGGTCGGCCCAAGGGGAAGCTGGGCCCGGCCTCCGCGGTGAAGTTGGCCGCCAACCGGACCACGGCGGGAGCTCGCCGGCGCCGGACGCGATGCCGCAAGTGCGAGGCCTGCCTGCGGACGGAGTGCGGCGAGTGCCACTTCTGCAAGGACATGAAGAAGTTCGGGGGCCCCGGGCGGATGAAGCAGAGCTGCATCATGAGGCAGTGCATCGCG
Seq C2 exon
CCAGTGCTGCCTCACACCGCTGTGTGCCTGGTGTGTGGCGAGGCAGGAAAAGAGGACACAGTGGAAGAGGAAGAAGGCAAATTTAACCTCATGCTCATGGAATGCTCCATCTGCAATGAAATCATCCACCCTGGATGCCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328-'31-23,'31-20,33-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=0.227 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=62.7)
C2:
PF0062824=PHD=PU(61.5=83.3),PF0030115=Rubredoxin=PU(35.6=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCCTGAAGGAGCACGC
R:
CTTAAGGCATCCAGGGTGG
Band lengths:
231-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]