DreEX6051094 @ danRer10
Exon Skipping
Gene
ENSDARG00000036593 | kdm2ba
Description
lysine (K)-specific demethylase 2Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2195]
Coordinates
chr8:40213253-40231444:-
Coord C1 exon
chr8:40231237-40231444
Coord A exon
chr8:40214636-40214902
Coord C2 exon
chr8:40213253-40213396
Length
267 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTTCTTTCTTTCAGCAA
3' ss Score
10.58
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
TGCCTGTGCAGCTGCCCGTTCCAGACAGGAAAAGAGAGAGAGGGAGAACCAGGAGCGAGAAGAAGACGGATAAAGAAAGGAAGAGCGCTATTGTGGGCTTGTAGCCATGTCTGCGTTGTGTTTGTTTGCTTTGCTATAAGATCAGATGGCCATGGCCATGTCACTAAGCGCAGACGATGAGGATTACGATTCGGACACAGCCGAACAG
Seq A exon
CAACAGCTACCCAACAAACCCAAACCTAAAATGGCTACATCAACAGCCACAACTCCATCAGCGACCACTTCTTCATCCACTGCAACGGCAGTCAAGCTGCCATCCAATCGAACCTCCTCCGGAGCCCGACGCAGACGTACACGATGCCGGAAGTGCGAGGCATGCGTGCGGACAGAATGTGGAGAGTGTCACTTCTGCAAGGATATGAAAAAGTTTGGAGGCCCCGGTCGAATGAAACAGTCTTGCATCATGAGGCAATGCATTGCG
Seq C2 exon
CCTGTGTTACCACACACAGCAGTTTGTGTGGTGTGTGGTGAAGCTGGTAAAGAAGACACTCTTGATGACGAGGATGAAAAATTTAACGCCATGCTCATGGAGTGCTCCATCTGCAATGAGATTGTCCACCCAAATTGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036593-'6-6,'6-3,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.468 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
PF0200815=zf-CXXC=WD(100=52.8)
C2:
PF0062824=PHD=PU(61.5=83.3),PF0030115=Rubredoxin=PU(35.6=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCAGGAGCGAGAAGA
R:
TGAGGCAATTTGGGTGGACAA
Band lengths:
308-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]