MmuEX0041113 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3190147-3193082:+
Coord C1 exon
chr17:3190147-3190280
Coord A exon
chr17:3191817-3191961
Coord C2 exon
chr17:3193014-3193082
Length
145 bp
Sequences
Splice sites
3' ss Seq
GACATTTTCTATTCACAAAGATT
3' ss Score
3.13
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AATGGGAAACTGTGAAAGCCTCAGAACCTGTTAAAGAGCCAGTGCAGACTGCACAGAGTCCAGCTCCAGTTGAGAAGGAGTCAGTGGTCACCACACAGGCAGAGGTTTTCCCTCCTCCTGTCGCCATGCTGCAG
Seq A exon
ATTCCTGTAGCACCAGCTGTTCCTGCAGTTAGCTTAGTTCCTCCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAACCCGATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
Seq C2 exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCGGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'26-30,'26-29,27-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.635 A=0.490 C2=0.708
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PD(56.0=93.3)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAACTGTGAAAGCCTCA
R:
ATGTTGGTACTACCGGTGGGA
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types