HsaEX6050103 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154822276-154827240:+
Coord C1 exon
chr6:154822276-154822409
Coord A exon
chr6:154824234-154824378
Coord C2 exon
chr6:154827172-154827240
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTATCCACAAAAGATT
3' ss Score
2.87
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGTGGGAAACTGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCAACTCCAGTTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCTCCTGTTGCTATGTTGCAG
Seq A exon
ATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTTTAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCCTTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTG
Seq C2 exon
GTTTCATGCCGCCTCCAGTTCCCCCACCTGTTGTGCCACCCCCTACGATTCCACCAGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.490 C2=0.992
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAACTGTGAAAAGCTCA
R:
TGTTGGTACTACTGGTGGAATCG
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains