BtaEX6050093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92863946-92867946:+
Coord C1 exon
chr9:92863946-92864079
Coord A exon
chr9:92865889-92866033
Coord C2 exon
chr9:92867878-92867946
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTCTACCCCCAAGATT
3' ss Score
5.59
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGTGGGAAACGGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCACCTCCAGCTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCACCTGTTGCTATGTTACAG
Seq A exon
ATTCCGGTAGCTCCAGCAGTGCCTGCAGTTAATTTAGTACCACCAACATTTCCTGTGTCAATGCCAGTTCCTCCTCCCGGCTTCAGTCCAATCCCTCCGCCTCCTTTTCTCCGAGCAAGTTTCAACCCTTCACAACCACCGCCTG
Seq C2 exon
GTTTCATGCCTCCTCCAGTTCCACCCCCTGTTGTACCACCACCTACTATCCCACCAGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'24-24,'24-22,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.531 C2=1.000
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PD(56.0=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAACGGTGAAAAGCT
R:
TGTTGGTACTACTGGTGGGAT
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]