RnoEX0078267 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44112085-44114764:+
Coord C1 exon
chr1:44112085-44112218
Coord A exon
chr1:44113681-44113825
Coord C2 exon
chr1:44114696-44114764
Length
145 bp
Sequences
Splice sites
3' ss Seq
GATGTTTTCTACTCACAAAGATT
3' ss Score
2.89
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AATGGGAAACTGTGAAAACCTCAGAACCCGTTAAAGAGACTGTCCAGACGACACAGAGTCCAGCTGCAGTTGAGAAGGAGACAGTGGTCACAACGCAGTCAGAGGTTTTCCCTCCTCCTGTCACCATGCTGCAG
Seq A exon
ATTCCTGTAGCACCAACCGTTCCTGCAGTTAGCTTAGTTCCACCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAGCCCCATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
Seq C2 exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCCGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.510 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAAACTGTGAAAACCTCAGA
R:
ATGTTGGTACTACGGGTGGGA
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]