HsaEX6050103 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155143410-155148374:+
Coord C1 exon
chr6:155143410-155143543
Coord A exon
chr6:155145368-155145512
Coord C2 exon
chr6:155148306-155148374
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTATCCACAAAAGATT
3' ss Score
2.87
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGTGGGAAACTGTGAAAAGCTCAGAACCTGTTAAAGAGACGGTCCAGACAACTCAGAGCCCAACTCCAGTTGAAAAGGAGACAGTGGTCACAACCCAGGCAGAGGTTTTCCCTCCTCCTGTTGCTATGTTGCAG
Seq A exon
ATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTTTAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCCTTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTG
Seq C2 exon
GTTTCATGCCGCCTCCAGTTCCCCCACCTGTTGTGCCACCCCCTACGATTCCACCAGTAGTACCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=0.490 C2=1.000
Domain overlap (PFAM):
C1:
PF120393=DUF3525=PD(56.0=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAAACTGTGAAAAGCTCA
R:
TGTTGGTACTACTGGTGGAATCG
Band lengths:
202-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)