GgaEX1050987 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49610804-49632638:+
Coord C1 exon
chr3:49610804-49610960
Coord A exon
chr3:49631829-49631973
Coord C2 exon
chr3:49632558-49632638
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCCATAAAAAAAGATT
3' ss Score
3.51
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGTAAAATTGTTAGAGTGCTAAACTTATGGCAGAAGAATAACGTGTTCAAGAGTGAAATTATTCAGCCTCTCTTGGATATGGCAGCAGGAATTCCTCCGCCAGTTGTGACCCCCGTCTTGCCCAGCACTGCTGCTGCTATGAGCAACAATACACCAG
Seq A exon
ATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
Seq C2 exon
GTTTTATGCCTCCCCCAGTTCCTCCTGTTGTCCCTCCTCCTGTTGTGCCACCACCTGTTGTACCACCAGTTGTTCCAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-13/13=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=0.412 C2=0.857
Domain overlap (PFAM):
C1:
PF048188=CTD_bind=PD(24.2=30.2)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000022182fB2454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAGAGTGCTAAACTTATGGCAGA
R:
TGGAACAACTGGTGGTACAAC
Band lengths:
226-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]