MmuEX0041340 @ mm9
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28294018-28297873:+
Coord C1 exon
chr17:28294018-28294134
Coord A exon
chr17:28295826-28295873
Coord C2 exon
chr17:28297757-28297873
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACAATGTCAAACAGGGG
3' ss Score
6.16
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TGACCTGCAACTATGGTAATGGCGGCTGCCAGCACACCTGCGATGACACGGAGCAGGGTCCTCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCACACCGACGGGAAGACATGCATTG
Seq A exon
GGGAAAGGCGGCCAGAGCAGCTCGGGCCCACTCAGGCCGTTTCTAATG
Seq C2 exon
AAACCTGTGCTGTCAACAACGGAGGCTGCGACAGTAAGTGCCATGATGCAGCGACCGGAGTCCACTGCAGCTGTCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCAAGTTTGTGCTCCACA
R:
CAGCATGAAACCCACAGGACA
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: