RnoEX0078751 @ rn6
Exon Skipping
Gene
ENSRNOG00000000500 | Scube3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:RGD Symbol;Acc:1304880]
Coordinates
chr20:7732028-7735854:+
Coord C1 exon
chr20:7732028-7732144
Coord A exon
chr20:7733928-7733975
Coord C2 exon
chr20:7735738-7735854
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACAATGTCAAACAGGGG
3' ss Score
6.16
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TGACCTGCAACTACGGTAACGGTGGCTGCCAGCACACATGCGATGACACAGAGCAGGGTCCTCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCATACGGACGGAAAGACATGCATTG
Seq A exon
GGGAAAGGCGCCTAGAGCAGCACGGGCCCACTCAGGCCGTTTCTAATG
Seq C2 exon
AGACCTGTGCCGTCAACAACGGAGGCTGTGACAGTAAGTGTCACGATGCAGCGACCGGCGTCCACTGCAGCTGCCCTGTGGGTTTCATGCTGCAGCCAGACAGAAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000500_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
ENSRNOT00000000593fB13021
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCGATGACACAGAGCAG
R:
CGCTGCATCGTGACACTTACT
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]