BtaEX0031644 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009226 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr23:9151767-9156441:+
Coord C1 exon
chr23:9151767-9151883
Coord A exon
chr23:9154004-9154051
Coord C2 exon
chr23:9156325-9156441
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTACAATGTCAAACAGGGG
3' ss Score
6.16
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TGACCTGCAACTATGGCAACGGTGGCTGCCAGCACACGTGCGACGACACGGAGCAGGGGCCCCGGTGCGGCTGCCACGTCAAGTTTGTGCTCCACACCGACGGGAAGACGTGCATCG
Seq A exon
GGGAAAGGCGGCTAGAGCAGCACGTCCCCCCTCAGGCCGTTTCTAATG
Seq C2 exon
AGACCTGTGCTGTCAACAACGGGGGCTGCGACAGCAAGTGCCACGATGCAGCGACGGGCGTCCACTGCAGCTGCCCTGTGGGCTTCATGCTGCAGCCAGACAGGAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009226_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
ENSBTAT00000012158fB6179
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTGCAACTATGGCAACG
R:
CGTTGTTGACAGCACAGGTCT
Band lengths:
138-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development