DreEX0064645 @ danRer10
Exon Skipping
Gene
ENSDARG00000011490 | scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:ZFIN;Acc:ZDB-GENE-060717-1]
Coordinates
chr23:41496574-41534468:-
Coord C1 exon
chr23:41534352-41534468
Coord A exon
chr23:41510532-41510582
Coord C2 exon
chr23:41496574-41496690
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTGTGTGTGCAGAGG
3' ss Score
8.22
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
TGACCTGTAACTATGGTAATGGCGGCTGTCAGCACATCTGTGAGGAAACGGATCATGGGCCCAAATGCTCGTGTCACATGAAGTTTGCTCTTCACTCAGATGGAAAGACCTGTGTAG
Seq A exon
AGGAAAGGAGTGCCCAACATCAGCCACTGCAGCCACAGCTGTTACCCAATG
Seq C2 exon
AGACGTGTGCAGTGAATAACGGTGGTTGTGACAGCACGTGTCATGATGCTGTGACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTCACTTTACAGCCCGACCGCAAGACCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011490_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NO
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Inclusion Isoform:
ENSDART00000102879fB5430
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACGGATCATGGGCCCAAA
R:
CGAACACCAGTCACAGCATCA
Band lengths:
137-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]