MmuEX0045057 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48403975-48405162:+
Coord C1 exon
chr6:48403975-48404092
Coord A exon
chr6:48404683-48404858
Coord C2 exon
chr6:48404938-48405162
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGGTCAGGCTTCTCTTCCAGGAG
3' ss Score
7.07
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GACTCTGTGAAAGGCCAGCTGCTGGTTGTGTTGGAACATGGGGCCTGTGACACTGGGAGCTGCCTCCATGCCCTCTCTGTCTTCCTGGGGAACACCCACATTCAGCTCAGATACTCAG
Seq A exon
GAGCTGTGCTGGTAGACGGGGAGGATGTAGACCTGCCCTGGATTGGTGTTGAGGGCTTCAATATTTCCTGGGCCTCTTCTACATTCTTGCTATTGCACTGGCCTGGGGCCTGGGTTCTCTGGGGAGTGGCTGAGCCTGCGGCATACATCACGCTGGACCCCCGTCATGCCTACCAG
Seq C2 exon
GTGCAGGGTCTGTGTGGTACTTTTACCTGGAAGCAACAGGATGACTTTCTGACACCGGCTGGAGACATAGAGACTAGTGTCACTGCCTTTGCTAGCAAGTTCCAAGTGTCAGGTGATGGAAGGTGCCCCTTGGTGGACAAAAGCCCACTCTTCTGCAGTTCTTACTCTCAGCACCTCACCTTCACAGAGGCAGCCTGTGCCATCCTGCATGGCCATGCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.8=100)
A:
PF0009420=VWD=FE(38.4=100)
C2:
PF0009420=VWD=PD(13.9=28.0),PF087426=C8=PU(21.9=21.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCCTCTCTGTCTTCC
R:
TCTGTGAAGGTGAGGTGCTGA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: