RnoEX6013520 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78086316-78087581:+
Coord C1 exon
chr4:78086316-78086433
Coord A exon
chr4:78087099-78087274
Coord C2 exon
chr4:78087354-78087581
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGGTCAGGCCTCTCTTCCAGGAG
3' ss Score
6.48
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GACTCTGTGAAAGGCCAGCTGCTGGTTGTGTTGGAACATGGGGCCTGTGAGACTGGGAGCTGCCTCCATGCCCTCTCTGCCTTCCTGGGGAAAACCCACATTCAGCTCAGATACTCAG
Seq A exon
GAGCTGTGCTGGTAGACGGACAAGATGTAGACTTGCCCTGGATTGGTGCTGAGGGCTTCAATGTTTCCCATGCCTCTTCAACATTCTTGCTATTGCGCTGGCCTGGGGCCTGGGTTCTCTGGGGAGTGGCTGACCCTGCAGTGTACATCACCTTGGACCCCCGTCATGCCTACCAG
Seq C2 exon
GTGCAGGGTCTGTGTGGCACTTTTACCTGGAAGCAACAGGATGACTTTCTGACACCGGCCGGAGACATAGAGACTAGTGTCACTGCCTTTGCTAGCAAGTTCCAAGTGTCAGGTGATGGGAGGTGCCCCTTGGTGGACAACACCCCACTGTCCTCCTGCAGTACTTACTCTCAGCGCCTCGCTTTCGCAGAGGCAGCCTGTGCTGCCCTGCATGGCCACGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'12-14,'12-13,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(25.8=100)
A:
PF0009420=VWD=FE(38.4=100)
C2:
PF0009420=VWD=PD(13.9=27.6),PF087426=C8=PU(21.9=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGTGAAAGGCCAGCTG
R:
ACCTCCCATCACCTGACACTT
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]