GgaEX7001561 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:411386-412060:+
Coord C1 exon
chr2:411386-411512
Coord A exon
chr2:411594-411766
Coord C2 exon
chr2:411839-412060
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGCACCCCACACAGGAG
3' ss Score
7.35
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACTTTGTGGAGGGGACGCTGCGGATCACGGTGGAGCAGGAGGCATGCGGTGGCCACCAGCCCCTCAGCTGTCTCCGGGCGCTCTCCATCACAGTGCCGGGAACCTCAGCCCGGCTGCACAGCACAG
Seq A exon
GAGAGGTGGTGGTGGATGGGCGCGTGGTGCCGCTGCCCTTTGCCAGTGCTGCGCTGACTGTACGCCGAGCCTCCTCCTCCTTCCTGCTGCTCCAGACCTTTGGGGCCCACCTGCTGTGGGGACTGGAGACCCCTGCAGCATACATCACCCTGCAGCCTGCCTTCGCCAACAAG
Seq C2 exon
GTGCGCGGGCTCTGCGGCACCTACAACTGGGACCAGCGGGACGACTTTGCCACGCCAGCGGGCGACGTGGAAGTCGGTGTCACTGCCTTTGCCAACAAATACCGGGTGTCCACCGACTGCCCCGTGCTCAGCCCGGTCCCCTTTGAGCCCTGCAGCACCTACGCCCCGCGGAGGGAACTCGCTGCTGCCGCCTGTGCCATCCTGCACGGCGCGTCCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(27.8=100)
A:
PF0009420=VWD=FE(37.7=100)
C2:
PF0009420=VWD=PD(13.9=28.4),PF087426=C8=PU(21.9=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGGTGGAGCAGGAGG
R:
CTGCAGGGCTCAAAGGGGA
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]