BtaEX6029440 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113444348-113445520:+
Coord C1 exon
chr4:113444348-113444465
Coord A exon
chr4:113445033-113445208
Coord C2 exon
chr4:113445293-113445520
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCCCTCTCCTCCTATTCCAGGAG
3' ss Score
10.34
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACTTTGCCAAGCGGCAGCTGCTGATTGTACTGGAACACGGGGACTGTGACGCTGGGAGCTGCCTCCATGCCATCTCTGTCTCCCTGGGGGACACCCTCGTCCAGCTCAGGGACTCAG
Seq A exon
GAGTTGTGCTGGTCGACGGTCAGGATGTGGCCTTGCCCTGGAGTGCAGCTGGGGGCCTCAGTGTCTCCCGGGCCTCTTCCTCTTTCCTGCTGCTGCGCTGGCCTGGTGCCCGCATCCTCTGGGGAGTGTCTGACCCTGCAGCCTACATCACCCTGGACCCCCACCACGCCCACCAG
Seq C2 exon
GTGCAGGGTCTGTGTGGCACCTTCACCCGGAATCAGCAGGATGACTTCCTGACCCCTGCTGGCGATGTGGAGACTAGTATCACCGCCTTTGCTAGCAAGTTCCAGGTGGCAGGCGGGGGAACGTGCTCCTTGGAGGCCAGCACTCCGCTTTCCCCCTGCAGCACCCACACTGAGCGCCAGGTTTTCGCGGAGGTAGCCTGTGCCATCCTGCATGGCCCAACCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(28.5=100)
A:
PF0009420=VWD=FE(42.3=100)
C2:
PF0009420=VWD=PD(15.3=27.6),PF087426=C8=PU(21.9=21.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGCCATCTCTGTCTCCC
R:
CTACCTCCGCGAAAACCTGG
Band lengths:
250-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]