HsaEX0061891 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149479270-149480422:+
Coord C1 exon
chr7:149479270-149479387
Coord A exon
chr7:149479935-149480110
Coord C2 exon
chr7:149480195-149480422
Length
176 bp
Sequences
Splice sites
3' ss Seq
CATCAGACCCCCTGTTCCAGGAG
3' ss Score
5.11
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GACTATGTGAAGGGACAGCTACTGATCCTACTGGAGCATGGGGCCTGCGACGCTGGGAGCTGCCTGCACGCCATCTCCGTCTCCCTGGAGGACACCCACATCCAGCTCAGGGACTCAG
Seq A exon
GAGCTGTGCTGGTCAATGGGCAGGATGTGGGCTTGCCCTGGATTGGCGCTGAGGGCCTCAGTGTGCGCCGAGCTTCCTCTGCCTTTCTGCTGCTGCGCTGGCCTGGGGCCCAGGTGCTCTGGGGACTGTCTGACCCTGTAGCCTACATCACCCTGGACCCCCGCCATGCCCACCAG
Seq C2 exon
GTGCAGGGTCTGTGTGGCACCTTCACCCAGAACCAGCAGGACGACTTCCTGACACCAGCCGGAGATGTGGAAACTAGCATTGCTGCCTTTGCTAGCAAGTTCCAGGTGGCCGGCAAGGGAAGATGCCCCTCTGAGGACAGTGCCCTGCTGTCTCCCTGCACCACCCACTCCCAGCGCCACGCCTTCGCAGAGGCGGCCTGTGCCATCCTGCACAGCTCTGTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAGCTCAGGGACTCAG
R:
AAGACAGAGCTGTGCAGGATG
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)