MmuEX6004188 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48495108-48496522:+
Coord C1 exon
chr6:48495108-48495310
Coord A exon
chr6:48496136-48496263
Coord C2 exon
chr6:48496380-48496522
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCGTATGTGTGTTTCTCAGAGT
3' ss Score
8.94
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACATGCATCAATGGGACCCTGATGTGTCCACACCTTGAGTGTCCAGTCCTGGGACCTTGGTCAGCTTGGAGTGAGTGCTCAGCTGTCTGTGGTAAGGGCACCATGGTGCGCCACAGGAGTTGTGAGGAACATCCTGATCGTGAACCATGCCAGGCTCTGGATCTGCAGCAATGGCAAGAGTGTAACCTGCAAGCCTGTCCTG
Seq A exon
AGTGCCCACCTGGGCAGGTGCTCAGTACCTGTGCCACTATGTGCCCGAGCCTTTGCTCCCACTTGTGGCCTGGCACCATCTGTGTGCGGGAACCCTGCCAGCTTGGCTGTGGCTGCCCTGGGGGACAG
Seq C2 exon
CTGCTATACAACGGCACGTGCATTCCCCCTGAGGCCTGTCCCTGCACCCAGTTTTCCCTACCCTGGGGCCTCACCCTACCCTTGGAAGAGCAGGCCCGGGAGCTGCCCTCAGGGACTGTGCTCACTCGGAACTGCACACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'105-118,'105-115,107-118=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=PD(59.4=27.5),PF0009014=TSP_1=WD(100=71.0)
A:
PF0182612=TIL=PU(74.5=95.3)
C2:
PF0182612=TIL=PD(21.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATGTGTCCACACCTTG
R:
GTAGGGAAAACTGGGTGCAGG
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types