GgaEX6017959 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:439898-440481:+
Coord C1 exon
chr2:439898-440062
Coord A exon
chr2:440138-440265
Coord C2 exon
chr2:440336-440481
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCTGCATCCTCGCTCGCAGAGT
3' ss Score
7.22
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CCGGCTGCCAGCTGAGCCCCTGGTCCCCCTGGAGCCCCTGCAGCAGCAGTTGCGGAGGGGGCCGCTCGGAGCGCAGCCGGGAGCTGCTGGGGGGTGAGGAGGAGCCGTGCCCCATCCCAGCACTGCGGCAGCACCGCGTCTGCAATGTGCACAACTGCACGCAGG
Seq A exon
AGTGTCCCCGCAGCCAGGTGCACAGGGAGTGTGCCAACGCCTGTCCCCATGCCTGCGCCGACCTGCGTCCACAGACACAGTGCCTACCACAGCCCTGCCAGCCTGGTTGTGCCTGCCCGCCCGGACAG
Seq C2 exon
GTGCTGCAGGATGGAGCCTGTGTGCCCCCCGAGGAGTGCCGCTGCACACTCGACTCCACCATGCCCGGAGTGCTCAACCTGTCACGGGAGGAGCAAGAGCAGGAGCACGCACCGGGCAGCCGCCTGCAGCACCGCTGCAACACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'95-95,'95-94,96-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.204
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=85.7)
A:
PF0182612=TIL=PU(74.5=95.3)
C2:
PF0182612=TIL=PD(21.8=24.5),PF053758=Pacifastin_I=PU(40.0=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAGCCCCTGGTCC
R:
GTGACAGGTTGAGCACTCCG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]