GgaEX6017959 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr2:344965-345825:+
Coord C1 exon
chr2:344965-345167
Coord A exon
chr2:345482-345609
Coord C2 exon
chr2:345680-345825
Length
128 bp
Sequences
Splice sites
3' ss Seq
GGCTGCATCCTCGCTCGCAGAGT
3' ss Score
7.22
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CACCTGTGAGAATGGCACCATGGTGTGCCCAGCGCTGCCGTGCCCATCCTATGGGCCCTGGTCCACCTGGAGCCCCTGCTCGAGCAGCTGTGGCAGTGGCCGCACCTCCCGGCATCGCACCTGTGAGCCGAACCCCGGCGGGGTGCCCTGCATGGCCAGCGGGATGCAGGAGACAGCTGAGTGCAGCCCCCAGCCCTGCCCTG
Seq A exon
AGTGTCCCCGCAGCCAGGTGCACAGGGAGTGTGCCAACGCCTGTCCCCATGCCTGCGCCGACCTGCGTCCACAGACACAGTGCCTACCACAGCCCTGCCAGCCTGGTTGTGCCTGCCCGCCCGGACAG
Seq C2 exon
GTGCTGCAGGATGGAGCCTGTGTGCCCCCCGAGGAGTGCCGCTGCACACTCGACTCCACCATGCCCGGAGTGCTCAACCTGTCACGGGAGGAGCAAGAGCAGGAGCACGCACCGGGCAGCCGCCTGCAGCACCGCTGCAACACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'93-97,'93-96,95-97=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=71.0)
A:
PF0182612=TIL=PU(74.5=95.3)
C2:
PF0182612=TIL=PD(21.8=24.5),PF053758=Pacifastin_I=PU(40.0=24.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAATGGCACCATGGTGT
R:
GTGGAGTCGAGTGTGCAGC
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]