RnoEX6013447 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78128170-78129394:+
Coord C1 exon
chr4:78128170-78128372
Coord A exon
chr4:78129017-78129144
Coord C2 exon
chr4:78129252-78129394
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCATATGTGTGTTTCTCAGAGT
3' ss Score
8.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CACATGCATCAATGGGACCCTGATGTGTCCATACCCTGAGTGTCCAGTCCTGGGACCTTGGTCACCCTGGAGTGAGTGCTCTGCTGTCTGTGGTGGGGGCACCATGGTGCGCTACAGGAGTTGTGAGGAGCATCCTGACAGCGCACCATGCCAGGCCCTGGATATGGAGCAACGAGTAGAGTGTAACCTGCAAACCTGCCCTG
Seq A exon
AGTGCCCGCCTGGGCAGGTGCTCAGTACCTGTGCCACTTTGTGCCCCAGCTTCTGCTCCCACTTGTGGCCTGGCACCATCTGTGTGCGGGAACCCTGCCAGCTTGGCTGTGGCTGCCCTGGGGGACAG
Seq C2 exon
CTGCTACACAGTGGCACATGCATTCCCCCTGAGGCCTGTCCCTGCACCCGGCTTTCCCTGCCCTGGGGCCTCACCCTACCCTTGGAAGAGCAGGCCCAGGAGCTGCCCTCAGGGACTGTGCTCACCTGGAACTGCACACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'100-105,'100-104,101-105=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=72.5)
A:
PF0182612=TIL=PU(74.5=95.3)
C2:
PF0182612=TIL=PD(21.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGCGCTACAGGAGTTG
R:
GTGTGTGCAGTTCCAGGTGAG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]