BtaEX0034653 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113486096-113486766:+
Coord C1 exon
chr4:113486096-113486298
Coord A exon
chr4:113486397-113486524
Coord C2 exon
chr4:113486624-113486766
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCCCTCCACCCCCAGAGT
3' ss Score
9.59
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CACCTGTGTCAACGGGTCCCTGGCGTGCTCCTCCCATGAGTGTCCAACCCTCGGGCCTTGGTCAGCCTGGAGCAACTGCTCTGCTCCCTGTGGTGGGGGCACCACCAAAAGACATCGGAGCTGCAAGGAGGGCCCCGGGGTGACACCGTGCCAGGCCCAGGACATGGAGCAACAGCAGGACTGTAACCTGCAGCCCTGCCCCG
Seq A exon
AGTGCCCACCCGGCCAGGTGCTCAGTGCCTGCGCTGTCTCGTGCCCGCGCCTCTGTTCGCATCTGCAGCCTGGCACCCCCTGCATGCAGGAACCCTGCCAGCTTGGCTGTGACTGCCCCAGAGGGCAG
Seq C2 exon
CTACTGCACAACGGCACGTGTGTGCCCCCTGCCGAGTGCCCCTGCACCCAGCTGTCTCTGCCCTGGGGCCTCACCTTGACTCTTGAAGAGCAGCATCGAGAGCTGCCCCCAGGGACTCTGCTCACCCAGAACTGCACCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'109-109,'109-108,110-109
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=PD(60.6=29.0),PF0009014=TSP_1=WD(100=71.0)
A:
PF0182612=TIL=PU(74.5=95.3)
C2:
PF0182612=TIL=PD(21.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATGAGTGTCCAACCCTC
R:
TCAAGAGTCAAGGTGAGGCCC
Band lengths:
258-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development