MmuEX6028063 @ mm10
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:150753570-150756618:-
Coord C1 exon
chr1:150756523-150756618
Coord A exon
chr1:150755256-150755383
Coord C2 exon
chr1:150753570-150753714
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTACTCTTTCTCTGATGTAGTTG
3' ss Score
7.2
5' ss Seq
ATGGTAATA
5' ss Score
5.05
Exon sequences
Seq C1 exon
ATTTATGGGCAAGTGATAAAGGAACGTACATCTGTGAAGCTGAGAACCAGTTTGGAAAAATACAGTCGCAGACAACAGTAACGGTGACAGGACTCG
Seq A exon
TTGCCCCACTTATTGGAATCAGCCCTTCCATGGCCAGCGTTATTGAAGGACAGCCTCTAACTCTGCCTTGTACTCTGTTGGCTGGAAATCCCATTCCAGAACGGCGGTGGATGAAGAACTCAGCCATG
Seq C2 exon
TTGGTACAAAATCCCTACATAACTGTGCGCAGCGATGGGAGCCTCCATATTGAAAGAGTTCGACTTCAGGATGGAGGCAAATACACTTGTGTGGCCAGTAATGTCGCTGGAACCAATAACAAAACAACCTCTGTGGCCGTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'19-21,'19-20,20-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(30.4=84.8)
A:
PF0767911=I-set=PU(45.5=93.0)
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGCAAGTGATAAAGGAACGT
R:
CACGGCCACAGAGGTTGTTTT
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types