GgaEX6045331 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:268761-271949:+
Coord C1 exon
chr8_random:268761-268859
Coord A exon
chr8_random:270213-270340
Coord C2 exon
chr8_random:271805-271949
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTGTCAAGTTG
3' ss Score
5.88
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATCTGTGGGTTAATGATGAAGGAAGTTATGTCTGTGAAGCTGAAAACCAGTTTGGAAGGATTCAGTCACAGCCAGCCACAATCACAGTAACTGGACTGG
Seq A exon
TTGCACCTCTGATTGGAATAAGCCCAGCCACAGCCAATGTAATCGAGGGGCAGCAGCTCACTTTGCCATGTGTTCTACTTGCTGGAAACCCCATTCCAGACCGGAAGTGGATTAAGAACAGTATGGTG
Seq C2 exon
CTGGTTTCCAATCCCTACATTAATGTTCGAAGTGATGGGAGCCTGCATCTTGAAAGAGTTCGGCTGCAGGATGGGGGTGATTATACCTGCATGGCCAGTAATGTTGCTGGGACAAACAACAAAACCACTACTGTTAATGTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'22-32,'22-30,23-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.041
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(31.2=85.3)
A:
PF0767911=I-set=PU(45.5=93.0)
C2:
PF0767911=I-set=PD(52.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGGTTAATGATGAAGGAAGT
R:
ATACACATTAACAGTAGTGGTTTTGT
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]